Stem-loop gga-mir-125b-1

Accession

MI0029337

Description

Gallus gallus gga-mir-125b-1 precursor miRNA

Literature search

29 open access papers mention gga-mir-125b-1
(68 sentences)

Sequence

48323431 reads, 22306.0 reads per million, 260 experiments

guugcgccccucucaaucCCUGAGACCCUAACUUGUgauguuuagcuuuuaaauccACGGGUUAGGCUCUUGGGAGCUGugaguugugcuuu
...((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))...

Structure

guu    cc   u  -a    U    C           au     g 
   gcgc  cuc ca  ucCC GAGA CCUAACUUGUg  guuua c
   ||||  ||| ||  |||| |||| |||||||||||  ||||| u
   cgug  gag GU  AGGG UUCU GGAUUGGGCAc  uaaau u
uuu    uu   u  CG    -    C           -c     u 

Annotation confidence Medium

Genome context

24: 3416223-3416314 [+]

Mature gga-miR-125b-1-5p

• Accession: MIMAT0001105
• Description: Gallus gallus gga-miR-125b-1-5p mature miRNA
• Sequence: 19 - CCUGAGACCCUAACUUGU - 36
• Evidence: experimental ; Illumina [2]

Mature gga-miR-125b-1-3p

• Accession: MIMAT0061081
• Description: Gallus gallus gga-miR-125b-1-3p mature miRNA
• Sequence: 57 - ACGGGUUAGGCUCUUGGGAGCUG - 79
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196