Stem-loop gga-mir-1452

Accession

MI0007056

Description

Gallus gallus gga-mir-1452 precursor miRNA

Sequence

543 reads, 1.0 reads per million, 146 experiments

agggacugucUUGAGAUAAGACAGAGGAUAUUaagccugaaauaaaaauaAUAUCCUUCUUUCUUGUCUUUUagucuc
.(((((((....(((((((((.(((((((((((...............)))))))).))).))))))))).)))))))

Structure

a       ucUU         C   -        agccug 
 gggacug    GAGAUAAGA AGA GGAUAUUa      a
 |||||||    ||||||||| ||| ||||||||      a
 cucugaU    UUCUGUUCU UCU CCUAUAau      a
-       ---U         U   U        aaaaau 

Annotation confidence High

Genome context

Z: 67130788-67130865 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1452

Mature gga-miR-1452-5p

• Accession: MIMAT0007328
• Description: Gallus gallus gga-miR-1452-5p mature miRNA
• Sequence: 11 - UUGAGAUAAGACAGAGGAUAUU - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gga-miR-1452-3p

• Accession: MIMAT0051224
• Description: Gallus gallus gga-miR-1452-3p mature miRNA
• Sequence: 51 - AUAUCCUUCUUUCUUGUCUUUU - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185