Stem-loop gga-mir-1467-1

Accession

MI0007072

Description

Gallus gallus gga-mir-1467-1 precursor miRNA

Literature search

1 open access papers mention gga-mir-1467-1
(1 sentences)

Sequence

4980 reads, 4.0 reads per million, 192 experiments

gggacaggacagguuguuuUCUCAGCUACAUCGGUGUAAAUCcagggcaauucuacugaggUUCACACCAGAGUAACUGGGAUCagaaucuggccaccaucguccaccug
.((((.((.((((((.(..((((((.(((.(((((((.(((((((..........))).)))).))))).))))).))))))..).)))))).))......)))).....

Structure

----g    -----a  a      g uu      C   A  -     A    -   ggca 
     ggac      gg cagguu u  UCUCAG UAC UC GGUGU AAUC cag    a
     ||||      || |||||| |  |||||| ||| || ||||| |||| |||     
     ccug      cc gucuaa a  AGGGUC AUG AG CCACA UUgg guc    u
gucca    cuacca  g      g CU      A   -  A     C    a   aucu 

Annotation confidence High

Genome context

2: 134915018-134915127 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1467-1

Mature gga-miR-1467-5p

• Accession: MIMAT0007345
• Description: Gallus gallus gga-miR-1467-5p mature miRNA
• Sequence: 20 - UCUCAGCUACAUCGGUGUAAAUC - 42
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1467-3p

• Accession: MIMAT0007346
• Description: Gallus gallus gga-miR-1467-3p mature miRNA
• Sequence: 62 - UUCACACCAGAGUAACUGGGAUC - 84
• Evidence: experimental ; 454 [1], Northern [1], Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185