Stem-loop gga-let-7j

Accession

MI0001262

Description

Gallus gallus gga-let-7j precursor miRNA

Literature search

51 open access papers mention gga-let-7j
(236 sentences)

Sequence

24401106 reads, 13478.0 reads per million, 260 experiments

gUGAGGUAGUAGGUUGUAUAGUUUGGugggagggauucugucccauuucaggugauaaCUAUACAGUCUAUUGCCUUCCUUaa
..(((((((((((((((((((((...((((((((((...))))).)))))......)))))))))))))))))))))......

Structure

----gU                     ---UGG     -     u 
      GAGGUAGUAGGUUGUAUAGUU      uggga gggau  
      |||||||||||||||||||||      ||||| ||||| c
      UUCCGUUAUCUGACAUAUCaa      acuuu cccug  
aaUUCC                     uagugg     a     u 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

26: 1686090-1686172 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-let-7j

Mature gga-let-7j-5p

• Accession: MIMAT0001181
• Description: Gallus gallus gga-let-7j-5p mature miRNA
• Sequence: 2 - UGAGGUAGUAGGUUGUAUAGUUUGG - 26
• Evidence: experimental ; Illumina [2]

Mature gga-let-7j-3p

• Accession: MIMAT0026542
• Description: Gallus gallus gga-let-7j-3p mature miRNA
• Sequence: 59 - CUAUACAGUCUAUUGCCUUCCUU - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45