Stem-loop gga-mir-16-2

Accession

MI0001222

Description

Gallus gallus gga-mir-16-2 precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

22 open access papers mention gga-mir-16-2
(212 sentences)

Sequence

31126 reads, 384 reads per million, 5 experiments

ccuacuuguuccgcccUAGCAGCACGUAAAUAUUGGUGuaguaaaauaaaccuuaaaccCCAAUAUUAUUGUGCUGCUUAAgcguggcagagau
.....(((((.(((...(((((((((..((((((((.((..(((........))).)).))))))))..)))))))))...))).)))))....

Structure

ccuac     c   ccU         UA        U  ag   aau 
     uuguu cgc   AGCAGCACG  AAUAUUGG Gu  uaa   a
     ||||| |||   |||||||||  |||||||| ||  |||    
     gacgg gcg   UCGUCGUGU  UUAUAACC ca  auu   a
-uaga     u   AAU         UA        c  -a   cca 

Annotation confidence High

Genome context

chr9: 22276898-22276991 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-16-2

Mature gga-miR-16-5p

• Accession: MIMAT0001116
• Description: Gallus gallus gga-miR-16-5p mature miRNA
• Sequence: 17 - UAGCAGCACGUAAAUAUUGGUG - 38
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-16-2-3p

• Accession: MIMAT0031058
• Description: Gallus gallus gga-miR-16-2-3p mature miRNA
• Sequence: 60 - CCAAUAUUAUUGUGCUGCUUAA - 81
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45