Stem-loop gga-mir-196-4

Accession

MI0023559

Description

Gallus gallus gga-mir-196-4 precursor miRNA

Literature search

7 open access papers mention gga-mir-196-4
(10 sentences)

Sequence

281576 reads, 139.0 reads per million, 203 experiments

aacugcucugugguuUAGGUAGUUUCAUGUUGUUGGGgcuccaccuuucucuCUACAGCACGAAACUGCCUUAAUuacuucaguugauaucauc
(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........

Structure

---------     cucu      U          A      U    cucc 
         aacug    gugguu AGGUAGUUUC UGUUGU GGGg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauUAA UCCGUCAAAG ACGACA Cucu    c
cuacuauag     --uu      U          C      U    cuuu 

Annotation confidence High

Genome context

2: 32553100-32553193 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-196-4

Mature gga-miR-196-5p

• Accession: MIMAT0001121
• Description: Gallus gallus gga-miR-196-5p mature miRNA
• Sequence: 16 - UAGGUAGUUUCAUGUUGUUGGG - 37
• Evidence: experimental ; cloned [2]

Mature gga-miR-196-3p

• Accession: MIMAT0051204
• Description: Gallus gallus gga-miR-196-3p mature miRNA
• Sequence: 53 - CUACAGCACGAAACUGCCUUAAU - 75
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: