Stem-loop gga-mir-1456

Accession

MI0007061

Description

Gallus gallus gga-mir-1456 precursor miRNA

Literature search

4 open access papers mention gga-mir-1456
(6 sentences)

Sequence

1377 reads, 23 reads per million, 5 experiments

gucagauggagccugggccgaacaggGAAAGGACGGAGGCGGCCCGCGCggggucguucaguCGGGGUCGUCGCCGUCCCUUCcccguucgacccguacccgccugagcu
.((((.(((.(..((((.(((((.(((((.((((((.((((((((..(((((....))).))..)))))))).)))))).))))).))))).))))..)))).))))...

Structure

--g    a   a cc    c     a     A      A        GC  -   g 
   ucag ugg g  uggg cgaac ggGAA GGACGG GGCGGCCC  GC ggg u
   |||| ||| |  |||| ||||| ||||| |||||| ||||||||  || |||  
   aguc gcc c  gccc gcuug ccCUU CCUGCC CUGCUGGG  ug cuu c
ucg    c   - au    a     c     C      G        GC  a   g 

Annotation confidence Not enough data

Genome context

chrZ: 44897354-44897463 [-]

Mature gga-miR-1456-5p

• Accession: MIMAT0007333
• Description: Gallus gallus gga-miR-1456-5p mature miRNA
• Sequence: 27 - GAAAGGACGGAGGCGGCCCGCGC - 49
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gga-miR-1456-3p

• Accession: MIMAT0007334
• Description: Gallus gallus gga-miR-1456-3p mature miRNA
• Sequence: 63 - CGGGGUCGUCGCCGUCCCUUC - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185