miRBase entry: gga-mir-1459

Stem-loop gga-mir-1459


Accession
MI0007064
Description
Gallus gallus gga-mir-1459 precursor miRNA


Sequence

45 reads, 4.0 reads per million, 17 experiments
ucuAUCCUGUGAUGUUCUAUAACUGAGGUUUugaauggcagcuuuugacaugucaagccaggaaauguagaggaagucaccagag
......(((((((.(((((((.((..(((((.(((((.((.....)).))).))))))).))...)))))))...)))).)))..

Structure
ucuAUC   -    --G       --A  GA     u  -   g  g 
      CUG UGAU   UUCUAUA   CU  GGUUU ga aug ca c
      ||| ||||   |||||||   ||  ||||| || ||| || u
      gac acug   gagaugu   gg  ccgaa cu uac gu u
----ga   c    aag       aaa  -a     -  g   a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Z: 67133981-67134065 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1459
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1459-5p

Accession MIMAT0007337
Description Gallus gallus gga-miR-1459-5p mature miRNA
Sequence 4 - AUCCUGUGAUGUUCUAUAACUGAGGUUU - 31
Evidence experimental
454 [1]

References

  1. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185