Stem-loop gga-mir-16c

Accession

MI0007563

Description

Gallus gallus gga-mir-16c precursor miRNA

Literature search

23 open access papers mention gga-mir-16c
(239 sentences)

Sequence

1627349 reads, 985.0 reads per million, 259 experiments

gcucUAGCAGCACGUAAAUACUGGAGugggggaucgccuguugcucUCCAGUAUUGCAUUGCUGCUUUagu
(((..(((((((....((((((((((..(((.....)))......))))))))))....)))))))..)))

Structure

   cU       CGUA          ----ug   g 
gcu  AGCAGCA    AAUACUGGAG      ggg a
|||  |||||||    ||||||||||      ||| u
uga  UCGUCGU    UUAUGACCUc      ucc c
   UU       UACG          ucguug   g 

Annotation confidence High

Genome context

4: 4000810-4000880 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-16c

Mature gga-miR-16c-5p

• Accession: MIMAT0007739
• Description: Gallus gallus gga-miR-16c-5p mature miRNA
• Sequence: 5 - UAGCAGCACGUAAAUACUGGAG - 26
• Evidence: experimental ; Illumina [1,3], Northern [2]

Mature gga-miR-16c-3p

• Accession: MIMAT0026786
• Description: Gallus gallus gga-miR-16c-3p mature miRNA
• Sequence: 47 - UCCAGUAUUGCAUUGCUGCUUU - 68
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45