Accession
MI0005099
Description
Mareks disease virus type 1
mdv1-mir-M7 precursor miRNA
Sequence
ggagaacUGUUAUCUCGGGGAGAUCCCGAUcucuccuaccagcaacUCGAGAUCUCUACGAGAUUACAGuuuuugggggaaauguguccucagaacugcuuaaucguagaagcuuccuag
((((((((((.((((((.(((((((.(((...((......))....))).))))))).)))))).))))))((((((((.......)))))))).((((......))))....))))...
((((((((((.((((((.(((((((.(((...((......))....))).))))))).)))))).))))))((((((((.......)))))))).((((......))))....))))...
Structure
--- ------------------------------------------ U G C -Ucu cc ggag aacUGU AUCUCG GGAGAUC CGA cu u |||| |||||| |||||| ||||||| ||| || ccuu uuGACA UAGAGC UCUCUAG GCU ga a gau cgaagaugcuaauucgucaagacuccuguguaaaggggguuu U A A caac cc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The identity of the dominant mature miRNA is inferred from next-generation sequencing reads [4], and differs from previous annotations in miRBase and in [1-3].
Genome context
AF243438.1: 142501-142620 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mdv1-mir-M7
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mdv1-miR-M7-5p
| Accession | MIMAT0005804 |
| Description | Mareks disease virus type 1 mdv1-miR-M7-5p mature miRNA |
| Sequence | 8 - UGUUAUCUCGGGGAGAUCCCGAU - 30 |
| Evidence |
experimental
cloned [2], Northern [2], Illumina [4] |
Mature mdv1-miR-M7-3p
| Accession | MIMAT0003928 |
| Description | Mareks disease virus type 1 mdv1-miR-M7-3p mature miRNA |
| Sequence | 47 - UCGAGAUCUCUACGAGAUUACAG - 69 |
| Evidence |
experimental
cloned [1,3], Northern [1], Illumina [4] |
References
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