Stem-loop gga-mir-1329

Accession

MI0006979

Description

Gallus gallus gga-mir-1329 precursor miRNA mir-1329

Gene
family

RF03768; mir-1329

Literature search

2 open access papers mention gga-mir-1329
(2 sentences)

Sequence

53596 reads, 698 reads per million, 5 experiments

ucuuggucugguuguagagaUACAGUGAUCACGUUACGAUGGauuucucaaguaacaaCCUCGUAGCUUGAUCACGAUAUcccuaugacuugaga
......((.((((((((.((((..(((((((.(((((((.((................))))))))).)))))))..)))).)))))))).))..

Structure

ucuugg  u        a    CA       C       U  auuucuc 
      uc gguuguag gaUA  GUGAUCA GUUACGA GG       a
      || |||||||| ||||  ||||||| ||||||| ||        
      ag ucaguauc cUAU  CACUAGU CGAUGCU CC       a
----ag  u        c    AG       U       -  aacaaug 

Annotation confidence Medium

Genome context

chr3: 97355529-97355623 [+]

Mature gga-miR-1329-5p

• Accession: MIMAT0007281
• Description: Gallus gallus gga-miR-1329-5p mature miRNA
• Sequence: 21 - UACAGUGAUCACGUUACGAUGG - 42
• Evidence: experimental ; cloned [1], Illumina [2], 454 [3]

Mature gga-miR-1329-3p

• Accession: MIMAT0007282
• Description: Gallus gallus gga-miR-1329-3p mature miRNA
• Sequence: 59 - CCUCGUAGCUUGAUCACGAUAU - 80
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


3. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185