Stem-loop gga-let-7d

Accession

MI0001232

Description

Gallus gallus gga-let-7d precursor miRNA

Literature search

77 open access papers mention gga-let-7d
(307 sentences)

Sequence

75083 reads, 81.0 reads per million, 245 experiments

auugggcuccuaggaAGAGGUAGUGGGUUGCAUAGUUUUagggcagggauuuugcucacaaggagguaaCUAUACAACCUGCUGCCUUUCUUagggcuuuauu
...((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))))....

Structure

-auu    u       A              C      -------UUa      g 
    gggc ccuagga GAGGUAGUGGGUUG AUAGUU          gggcag g
    |||| ||||||| |||||||||||||| ||||||          |||||| a
    uucg ggaUUCU UUCCGUCGUCCAAC UAUCaa          cucguu u
uuau    -       -              A      uggaggaaca      u 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

12: 6270254-6270356 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-let-7d

Mature gga-let-7d-5p

• Accession: MIMAT0001161
• Description: Gallus gallus gga-let-7d-5p mature miRNA
• Sequence: 16 - AGAGGUAGUGGGUUGCAUAGUUUU - 39
• Evidence: not_experimental

Mature gga-let-7d-3p

• Accession: MIMAT0061071
• Description: Gallus gallus gga-let-7d-3p mature miRNA
• Sequence: 70 - CUAUACAACCUGCUGCCUUUCUU - 92
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716