Stem-loop gga-mir-21

Accession

MI0004994

Description

Gallus gallus gga-mir-21 precursor miRNA mir-21

Gene
family

RF00658; mir-21

Literature search

170 open access papers mention gga-mir-21
(808 sentences)

Sequence

75777555 reads, 36932.0 reads per million, 260 experiments

uguaccauccugucggaUAGCUUAUCAGACUGAUGUUGAcuguuggaucucauggCAACAACAGUCGGUAGGCUGUCugacauuuugguaucucuca
.((((((...((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))...))))))......

Structure

-----u      ucc                A     A     A    ugg 
      guacca   ugucggaUAGCUUAUC GACUG UGUUG cugu   a
      ||||||   |||||||||||||||| ||||| ||||| ||||    
      uauggu   acaguCUGUCGGAUGG CUGAC ACAAC ggua   u
acucuc      uuu                -     A     -    cuc 

Annotation confidence High

Genome context

19: 7850810-7850906 [+]

Mature gga-miR-21-5p

• Accession: MIMAT0003774
• Description: Gallus gallus gga-miR-21-5p mature miRNA
• Sequence: 18 - UAGCUUAUCAGACUGAUGUUGA - 39
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3]

Mature gga-miR-21-3p

• Accession: MIMAT0026643
• Description: Gallus gallus gga-miR-21-3p mature miRNA
• Sequence: 56 - CAACAACAGUCGGUAGGCUGUC - 77
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45