Stem-loop gga-mir-1462

Accession

MI0007067

Description

Gallus gallus gga-mir-1462 precursor miRNA

Sequence

67 reads, 2 reads per million, 2 experiments

ggcagugcugagugcagcucucucccUGGCUUUCCAUGACAGGUUGGuaccucucauccuuccUAUCUGUCCUUGUGAGCCCCAGAgugagugcugcugugucucugcuc
(((((.((.....(((((.(((.(.((((..(((((.(((((((.((..............)).)))))))..)).)))..)))).).))).)))))...))..))))).

Structure

-     -u  ugagu     u   u c    CU   -  -U       U  uaccuc 
 ggcag  gc     gcagc cuc c cUGG  UUC CA  GACAGGU GG      u
 |||||  ||     ||||| ||| | ||||  ||| ||  ||||||| ||       
 ucguc  ug     cgucg gag g GACC  GAG GU  CUGUCUA cc      c
c     uc  --ugu     u   u A    CC   U  UC       U  uuccua 

Annotation confidence Not enough data

Genome context

chr4: 8548164-8548273 [-]

Mature gga-miR-1462-5p

• Accession: MIMAT0007340
• Description: Gallus gallus gga-miR-1462-5p mature miRNA
• Sequence: 27 - UGGCUUUCCAUGACAGGUUGG - 47
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gga-miR-1462-3p

• Accession: MIMAT0026764
• Description: Gallus gallus gga-miR-1462-3p mature miRNA
• Sequence: 64 - UAUCUGUCCUUGUGAGCCCCAGA - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45