Stem-loop gga-mir-196-1

Accession

MI0001268

Description

Gallus gallus gga-mir-196-1 precursor miRNA

Literature search

7 open access papers mention gga-mir-196-1
(10 sentences)

Sequence

137875 reads, 2028 reads per million, 5 experiments

ugaacuagaacugcucugugaauUAGGUAGUUUCAUGUUGUUGGgcuuuaaauuuuaaacaCAAGAACAUCAAACUACCUGAUuuacuccaguua
........(((((....((((((((((((((((.(((((.(((.(.(((((...)))))).))).))))).))))))))))))))))..))))).

Structure

ugaacuag     cucu                C     G   G c     a 
        aacug    gugaauUAGGUAGUUU AUGUU UUG g uuuaa  
        |||||    |||||||||||||||| ||||| ||| | ||||| u
        uugac    cauuUAGUCCAUCAAA UACAA AAC c aaauu  
-------a     --cu                C     G   a -     u 

Annotation confidence High

Genome context

chr27: 3775036-3775130 [+]

Mature gga-miR-196-5p

• Accession: MIMAT0001121
• Description: Gallus gallus gga-miR-196-5p mature miRNA
• Sequence: 24 - UAGGUAGUUUCAUGUUGUUGG - 44
• Evidence: experimental ; cloned [2]

Mature gga-miR-196-1-3p

• Accession: MIMAT0031017
• Description: Gallus gallus gga-miR-196-1-3p mature miRNA
• Sequence: 62 - CAAGAACAUCAAACUACCUGAU - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45