Stem-loop gga-mir-29a

Accession

MI0001166

Description

Gallus gallus gga-mir-29a precursor miRNA

Literature search

16 open access papers mention gga-mir-29a
(32 sentences)

Sequence

52550 reads, 667 reads per million, 5 experiments

accccuuuagaggaugaCUGAUUUCUUUUGGUGUUCAGAgucaauaauauuuucUAGCACCAUUUGAAAUCGGUUauagugauugggga
.((((.(((....((((((((((((...(((((((.((((...........)))))))))))...))))))))))))..)))..)))).

Structure

a    -u   gagg            UUU       C    ucaa 
 cccc  uua    augaCUGAUUUC   UGGUGUU AGAg    u
 ||||  |||    ||||||||||||   ||||||| ||||    a
 gggg  agu    uaUUGGCUAAAG   ACCACGA Ucuu    a
a    uu   --ga            UUU       -    uuau 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr1: 3434776-3434864 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-29a

Mature gga-miR-29a-3p

• Accession: MIMAT0001096
• Description: Gallus gallus gga-miR-29a-3p mature miRNA
• Sequence: 55 - UAGCACCAUUUGAAAUCGGUU - 75
• Evidence: experimental ; Illumina [2]

Mature gga-miR-29a-5p

• Accession: MIMAT0026487
• Description: Gallus gallus gga-miR-29a-5p mature miRNA
• Sequence: 18 - CUGAUUUCUUUUGGUGUUCAGA - 39
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45