Stem-loop mdv1-mir-M31

Accession

MI0008337

Description

Mareks disease virus type 1 mdv1-mir-M31 precursor miRNA

Sequence

uccuguggccagcucacuggcugugcacugugcgauucuaagUGCUACAGUCGUGAGCAGAUCAAugga
(((..(((.(.((((((.(((((((((((...........))))).)))))))))))).).)))..)))

Structure

   ug   c a      u      -     gugc 
ucc  ugg c gcucac ggcugu gcacu    g
|||  ||| | |||||| |||||| |||||    a
agg  ACU G CGAGUG CUGACA CGUga    u
   uA   A A      -      U     aucu 

Annotation confidence Not enough data

Comments

This sequences was referred to as miR-M11 in [1], and as miR-M32 in [2]. It is unrelated to the miR-M11 sequence published by Yao et al (MIR:MI0006989) or miR-M32 identified later (MIR:MI0012487).

Genome context

AF243438.1: 5013-5081 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from mdv1-mir-M31

Mature mdv1-miR-M31

• Accession: MIMAT0007893
• Description: Mareks disease virus type 1 mdv1-miR-M31 mature miRNA
• Sequence: 43 - UGCUACAGUCGUGAGCAGAUCAA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185


2. PubMed ID: 18842708
   Sequence conservation and differential expression of Marek's disease virus microRNAs
   "Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J"
   "J Virol (2008) 82:12213-12220