Stem-loop gga-mir-460b

Accession

MI0007055

Description

Gallus gallus gga-mir-460b precursor miRNA mir-460

Gene
family

RF00712; mir-460

Literature search

6 open access papers mention gga-mir-460b
(10 sentences)

Sequence

116696 reads, 1253 reads per million, 5 experiments

cucagaucuggcucuacguugUCCUCAUUGUACAUGCUGUGUGuauuugccacguaCACAGCGCAUGCAAUGUGGACAUaauggagcuca
.........(((((((...(((((.(((((..(((((..(((((((.......)))))))..)))))))))).)))))...)))))))..

Structure

cucagaucu       cgu     U     UA     UG       uu 
         ggcucua   ugUCC CAUUG  CAUGC  UGUGuau  g
         |||||||   ||||| |||||  |||||  |||||||  c
         ucgaggu   ACAGG GUAAC  GUACG  ACACaug  c
-------ac       aaU     U     --     CG       ca 

Annotation confidence High

Genome context

chr4: 2714081-2714170 [+]

Mature gga-miR-460b-5p

• Accession: MIMAT0007326
• Description: Gallus gallus gga-miR-460b-5p mature miRNA
• Sequence: 22 - UCCUCAUUGUACAUGCUGUGUG - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gga-miR-460b-3p

• Accession: MIMAT0007327
• Description: Gallus gallus gga-miR-460b-3p mature miRNA
• Sequence: 57 - CACAGCGCAUGCAAUGUGGACAU - 79
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185