Stem-loop gga-let-7a-1

Accession

MI0001234

Description

Gallus gallus gga-let-7a-1 precursor miRNA

Literature search

54 open access papers mention gga-let-7a-1
(283 sentences)

Sequence

6162738 reads, 72963 reads per million, 5 experiments

ugcacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccgcaacugggagauaacuauacaaucuacugucuuuccuaaag
....((.(((((.(((((((((((((((((((((.....(((...(((......))).))))))))))))))))))))))))))))).))

Structure

ugca  g     U                     uuagg   aua   gc 
    cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccc  a
    || ||||| |||||||||||||||||||||     |||   |||   
    ga auccu uucugucaucuaacauaucaa     uag   ggg  a
----  a     -                     -----   --a   uc 

Annotation confidence High

Genome context

chr12: 6092517-6092606 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-let-7a-1

Mature gga-let-7a-5p

• Accession: MIMAT0001101
• Description: Gallus gallus gga-let-7a-5p mature miRNA
• Sequence: 13 - UGAGGUAGUAGGUUGUAUAGUU - 34
• Evidence: experimental ; cloned [2], Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: