Stem-loop gga-mir-23b

Accession

MI0001273

Description

Gallus gallus gga-mir-23b precursor miRNA

Literature search

35 open access papers mention gga-mir-23b
(106 sentences)

Sequence

2501984 reads, 1728.0 reads per million, 256 experiments

uguuguggcuguuUGGGUUCCUGGCAUGAUGAUUUgugaguuaagauuaaaAUCACAUUGCCAGGGAUUACCACauagccaugacc
.(((((((((((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))))))))))).

Structure

u           u   --          -  A      gugagu 
 guuguggcugu UGG  GUUCCUGGCA UG UGAUUU      u
 ||||||||||| |||  |||||||||| || ||||||       
 caguaccgaua ACC  UAGGGACCGU AC ACUAaa      a
c           C   AU          U  -      auuaga 

Annotation confidence High

Genome context

Z: 42260012-42260097 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-23b

Mature gga-miR-23b-5p

• Accession: MIMAT0026546
• Description: Gallus gallus gga-miR-23b-5p mature miRNA
• Sequence: 14 - UGGGUUCCUGGCAUGAUGAUUU - 35
• Evidence: experimental ; Illumina [3]

Mature gga-miR-23b-3p

• Accession: MIMAT0001186
• Description: Gallus gallus gga-miR-23b-3p mature miRNA
• Sequence: 52 - AUCACAUUGCCAGGGAUUACCAC - 74
• Evidence: experimental ; cloned [2], Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45