Stem-loop gga-mir-30b

Accession

MI0001199

Description

Gallus gallus gga-mir-30b precursor miRNA

Literature search

22 open access papers mention gga-mir-30b
(93 sentences)

Sequence

20255 reads, 265 reads per million, 5 experiments

cuaacuuuuaguuccUGUAAACAUCCUACACUCAGCUauaacaagugguagggCUGGGGGGUGGAUGUUUACUUCaacugacuugga
((((...((((((...((((((((((.((.(((((((....(....)....)))))))..))))))))))))...)))))).)))).

Structure

-    cuu      ccU          U  -A       auaa a 
 cuaa   uuaguu   GUAAACAUCC AC  CUCAGCU    c a
 ||||   ||||||   |||||||||| ||  |||||||    |  
 gguu   agucaa   CAUUUGUAGG UG  GGGUCgg    g g
a    --c      CUU          -  GG       gaug u 

Annotation confidence High

Genome context

chr2: 142757715-142757801 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-30b

Mature gga-miR-30b-5p

• Accession: MIMAT0001130
• Description: Gallus gallus gga-miR-30b-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCAGCU - 37
• Evidence: experimental ; cloned [1-3], Northern [1], Illumina [4]

Mature gga-miR-30b-3p

• Accession: MIMAT0026512
• Description: Gallus gallus gga-miR-30b-3p mature miRNA
• Sequence: 54 - CUGGGGGGUGGAUGUUUACUUC - 75
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


5. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45