Stem-loop mdv1-mir-M11

Accession

MI0006989

Description

Mareks disease virus type 1 mdv1-mir-M11 precursor miRNA

Sequence

aaaUUUUCCUUACCGUGUAGCUUAGAcucggaagaacuauuuUGAGUUACAUGGUCAGGGGAUUu
....((((((.(((((((((((((((...(......)...))))))))))))))).))))))...

Structure

aaaU      U               cuc ga 
    UUUCCU ACCGUGUAGCUUAGA   g  a
    |||||| |||||||||||||||   |   
    AGGGGA UGGUACAUUGAGUuu   c  g
-uUU      C               uau aa 

Annotation confidence Not enough data

Genome context

AF243438.1: 5506-5570 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from mdv1-mir-M11

Mature mdv1-miR-M11-5p

• Accession: MIMAT0005982
• Description: Mareks disease virus type 1 mdv1-miR-M11-5p mature miRNA
• Sequence: 4 - UUUUCCUUACCGUGUAGCUUAGA - 26
• Evidence: experimental ; cloned [1], Northern [1]

Mature mdv1-miR-M11-3p

• Accession: MIMAT0005983
• Description: Mareks disease virus type 1 mdv1-miR-M11-3p mature miRNA
• Sequence: 43 - UGAGUUACAUGGUCAGGGGAUU - 64
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015