Stem-loop gga-mir-19b

Accession

MI0001180

Description

Gallus gallus gga-mir-19b precursor miRNA mir-19

Gene
family

RF00245; mir-19

Literature search

9 open access papers mention gga-mir-19b
(53 sentences)

Sequence

4645 reads, 125 reads per million, 5 experiments

cacuguucucugguuAGUUUUGCAGGUUUGCAUCCAGCuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGAcuguggcagug
(((((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).)))))))

Structure

       cuc              -  -      UC    uguau 
cacuguu   ugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||||   |||||||||||||| || ||||||  ||||     a
gugacgg   gucAGUCAAAACGU CC AAACGU  GUcg     u
       --u              A  U      --    ucuca 

Annotation confidence High

Genome context

chr1: 148023376-148023462 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-19b

Mature gga-miR-19b-3p

• Accession: MIMAT0001110
• Description: Gallus gallus gga-miR-19b-3p mature miRNA
• Sequence: 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-19b-5p

• Accession: MIMAT0026496
• Description: Gallus gallus gga-miR-19b-5p mature miRNA
• Sequence: 16 - AGUUUUGCAGGUUUGCAUCCAGC - 38
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45