Search results

mir-19 family in Rfam (RF00245)

Summary
miR-19 is processed from multiple predicted precursor hairpins in both mouse (MIR:MI0000546, MIR:MI0000688, MIR:MI0000718) and human (MIR:MI0000073, MIR:MI0000074, and MIR:MI000075) [1,2,3]. miR-19 has now been predicted or experimentally confirmed in a wide range of vertebrate species (MIPF:MIPF0000011). The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequence is excised from the 3' arm of the hairpin. mir-19 microRNA (miRNA) precursor was imported from miRBase [4].
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5'

There are 106 hairpins in the mir-19 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-19a MI0000073 9302 chr13 91350891 91350972 + High
hsa-mir-19b-1 MI0000074 12712 chr13 91351192 91351278 + High
hsa-mir-19b-2 MI0000075 12558 chrX 134169671 134169766 - High
mmu-mir-19b-2 MI0000546 2410 chrX 52741983 52742066 - High
mmu-mir-19a MI0000688 839 chr14 115044000 115044081 + High
mmu-mir-19b-1 MI0000718 2437 chr14 115044305 115044391 + High
rno-mir-19b-1 MI0000847 189 chr15 100180464 100180550 + High
rno-mir-19b-2 MI0000848 177 chrX 140117379 140117474 - -
rno-mir-19a MI0000849 64 chr15 100180162 100180243 + High
gga-mir-19b MI0001180 125 chr1 148023376 148023462 - High
gga-mir-19a MI0001182 109 chr1 148023685 148023765 - High
xla-mir-19b MI0001452 - chr8L 48821956 48822028 - -
dre-mir-19a MI0001903 488 chr1 3297848 3297936 - High
dre-mir-19b MI0001904 1441 chr1 3297484 3297570 - High
dre-mir-19c MI0001905 728 chr14 31467026 31467130 - High
ssc-mir-19a MI0002422 635 chr11 66610343 66610424 + -
ggo-mir-19a MI0002967 - chr13 74168477 74168558 + -
ggo-mir-19b-1 MI0002969 - chr13 74168778 74168864 + -
lca-mir-19a MI0002973 - None None -
lca-mir-19b-1 MI0002975 - None None -
age-mir-19a MI0002979 - None None -
age-mir-19b-1 MI0002981 - None None -
ppa-mir-19a MI0002985 - chr13 91707614 91707695 + -
ppa-mir-19b-1 MI0002987 - chr13 91707915 91708001 + -
ppy-mir-19a MI0002991 - chr13 93460316 93460397 + -
ppy-mir-19b-1 MI0002993 - chr13 93460617 93460703 + -
ptr-mir-19a MI0002997 - chr13 77006997 77007078 + -
ptr-mir-19b-1 MI0002999 - chr13 77007298 77007384 + -
mml-mir-19a MI0003003 19 chr17 73096393 73096474 + -
mml-mir-19b-1 MI0003005 49 chr17 73096694 73096780 + High
sla-mir-19a MI0003009 - None None -
sla-mir-19b-1 MI0003011 - None None -
lla-mir-19a MI0003015 - None None -
lla-mir-19b-1 MI0003017 - None None -
mne-mir-19a MI0003021 - None None -
mne-mir-19b-1 MI0003023 - None None -
ggo-mir-19b-2 MI0003097 - chrX 134207621 134207716 - -
age-mir-19b-2 MI0003100 - None None -
ppa-mir-19b-2 MI0003103 - chrX 133615965 133616060 - -
lca-mir-19b-2 MI0003105 - None None -
mml-mir-19b-2 MI0003108 49 chrX 128132026 128132121 - -
ppy-mir-19b-2 MI0003110 - chrX 133612596 133612691 - -
ptr-mir-19b-2 MI0003113 - chrX 134037891 134037987 - -
sla-mir-19b-2 MI0003116 - None None -
lla-mir-19b-2 MI0003118 - None None -
mne-mir-19b-2 MI0003121 - None None -
fru-mir-19a MI0003235 - HE602547.1 13071578 13071658 + -
tni-mir-19a MI0003236 - 5 8188589 8188669 - -
fru-mir-19b MI0003237 - HE602547.1 13071933 13071995 + -
tni-mir-19b MI0003238 - 5 8188259 8188335 - -
xtr-mir-19a MI0004804 - chr2 120020112 120020192 - -
xtr-mir-19b-2 MI0004805 - chr2 120019859 120019937 - -
xtr-mir-19b-1 MI0004960 - chr8 47197821 47197893 - -
mdo-mir-19a MI0005356 16 chr7 108468609 108468689 - -
mdo-mir-19b-1 MI0005358 78 chr7 108468305 108468393 - High
bta-mir-19a MI0005460 83 chr12 66421518 66421599 + High
bta-mir-19b MI0005461 326 chr12 66421815 66421901 + High
oan-mir-19b-1 MI0006696 160 6 8561559 8561661 + -
oan-mir-19a MI0006873 59 Ultra284 6728409 6728548 + -
cfa-mir-19a MI0008051 - chr22 42478298 42478355 + -
cfa-mir-19b-1 MI0008054 - chr22 42478598 42478656 + -
cfa-mir-19b-2 MI0008174 - chrX 104895962 104896025 - -
bta-mir-19b-2 MI0012209 322 chrX 18021338 18021420 - -
eca-mir-19a MI0012833 17 chr17 61792692 61792773 + -
eca-mir-19b MI0012834 211 chr17 61793002 61793065 + -
eca-mir-19b-2 MI0012949 212 chrX 106692173 106692268 - -
ssc-mir-19b-2 MI0013159 1107 chrX 126199650 126199729 - -
ssc-mir-19b-1 MI0013160 1155 chr11 66610642 66610721 + -
tgu-mir-19b-1 MI0013719 - chr1 43202482 43202554 - -
tgu-mir-19b-2 MI0013720 - chr4A 7274224 7274296 + -
tgu-mir-19a MI0013841 - chr1 43202791 43202860 - -
pma-mir-19a MI0017019 - None None -
pma-mir-19b MI0017020 - GL478379.1 406814 406897 + -
pma-mir-19c MI0017021 - GL478379.1 404996 405075 + -
aca-mir-19a MI0018797 - GL343584.1 108526 108609 + -
aca-mir-19b MI0018798 - GL343584.1 108832 108901 + -
ola-mir-19d MI0019474 - 10 2001485 2001577 + -
ola-mir-19b-2 MI0019476 - 10 23325051 23325153 - -
ola-mir-19b-1 MI0019538 - 21 25693239 25693340 - -
ola-mir-19a MI0019540 - 21 25693520 25693627 - -
sha-mir-19b MI0019636 - GL849858.1 3486496 3486645 - -
cgr-mir-19a MI0020450 114 JH001979.1 109407 109486 - -
cgr-mir-19b MI0020451 253 JH001979.1 109073 109152 - -
ccr-mir-19d MI0023360 - None None -
mdo-mir-19b-2 MI0023937 79 chrX 35202389 35202447 - High
oan-mir-19b-2 MI0024088 161 Ultra284 6728772 6728832 + High
ipu-mir-19a-1 MI0024551 - None None -
ipu-mir-19a-2 MI0024552 - None None -
ipu-mir-19b MI0024553 - None None -
oar-mir-19b MI0025263 131535 chr10 66142232 66142318 + High
ssa-mir-19a-1 MI0026569 - None None -
ssa-mir-19a-3 MI0026570 - None None -
ssa-mir-19a-2 MI0026571 - None None -
ssa-mir-19c-1 MI0026572 - None None -
ssa-mir-19c-2 MI0026573 - None None -
ssa-mir-19c-3 MI0026574 - None None -
ssa-mir-19c-4 MI0026575 - None None -
ssa-mir-19d MI0026576 - None None -
efu-mir-19 MI0028679 0 JH977765.1 950805 950892 + -
chi-mir-19a MI0030677 - chr12 66729756 66729837 + -
chi-mir-19b MI0030678 - chr12 66730053 66730139 + -
tch-mir-19b-1 MI0031179 - KB320410.1 3473759 3473819 + -
tch-mir-19b-2 MI0031227 - KB370352.1 1650949 1651014 - -
tch-mir-19a MI0031271 - KB320410.1 3473460 3473518 + -
oha-mir-19a MI0031395 - AZIM01002132.1 158114 158203 - -
oha-mir-19b MI0031396 - AZIM01002132.1 157823 157918 - -



Comments or questions? Email mirbase@manchester.ac.uk