Stem-loop ola-mir-19b-2

Accession

MI0019476

Description

Oryzias latipes ola-mir-19b-2 precursor miRNA

Literature search

1 open access papers mention ola-mir-19b-2
(1 sentences)

Sequence

121854 reads, 1191.0 reads per million, 49 experiments

cccugagccggguuuauggugAGUUUUGUUGGUUUGCCUUCAGcugcguucgguguuugcUGUGCAAAUCCAUGCAAAgcccgcuguacccgaggcucaccgg
.((((((((((((..((((((.(((((((((((((((...((((.(((.....)))..)))).))))).))).))))))).))))))))))..))))))..))

Structure

c  --      --    uu      A       -   -     CUU    -u   u 
 cc  ugagcc  gggu  auggug GUUUUGU UGG UUUGC   CAGc  gcg u
 ||  ||||||  ||||  |||||| ||||||| ||| |||||   ||||  ||| c
 gg  acucgg  ccca  ugucgc cgAAACG ACC AAACG   GUcg  ugu g
-  cc      ag    --      c       U   U     --U    uu   g 

Annotation confidence Medium

Genome context

10: 23325051-23325153 [-]

Mature ola-miR-19b-2-5p

• Accession: MIMAT0057116
• Description: Oryzias latipes ola-miR-19b-2-5p mature miRNA
• Sequence: 22 - AGUUUUGUUGGUUUGCCUUCAG - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-19b-2-3p

• Accession: MIMAT0060787
• Description: Oryzias latipes ola-miR-19b-2-3p mature miRNA
• Sequence: 61 - UGUGCAAAUCCAUGCAAA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8