miRBase entry: dre-mir-19c

Stem-loop dre-mir-19c


Accession
MI0001905
Description
Danio rerio dre-mir-19c precursor miRNA mir-19
Gene
family?
RF00245; mir-19

Literature search
4 open access papers mention dre-mir-19c
(30 sentences)

Sequence

22092 reads, 728 reads per million, 11 experiments
uggaaaagcccuguuaucuggggugAGUUUUGCAGGAUUGCAUCCGGcuuuauuacaacaugcUGUGCAAAUCCAUGCAAAACUCGcugcgccagggacaaacca
(((.....(((((.....((.(((((((((((((((((((((..((((.............))))))).))))).))))))))))))).)).))))).....)))

Structure
   aaaag     uuauc  g             -     -   UC    uuuau 
ugg     cccug     ug ggugAGUUUUGCA GGAUU GCA  CGGc     u
|||     |||||     || ||||||||||||| ||||| |||  ||||     a
acc     gggac     gc ucGCUCAAAACGU CCUAA CGU  GUcg     c
   aaaca     ----c  g             A     A   --    uacaa 


Annotation confidence High
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Genome context
chr14: 31467026-31467130 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-19c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-19c-3p

Accession MIMAT0001784
Description Danio rerio dre-miR-19c-3p mature miRNA
Sequence 64 - UGUGCAAAUCCAUGCAAAACUCG - 86
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-19c-5p

Accession MIMAT0031940
Description Danio rerio dre-miR-19c-5p mature miRNA
Sequence 26 - AGUUUUGCAGGAUUGCAUCCGG - 47
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293