miRBase entry: dre-mir-19c

Stem-loop dre-mir-19c

Accession

MI0001905

Description

Danio rerio dre-mir-19c precursor miRNA mir-19

Gene
family?

RF00245; mir-19

Literature search

4 open access papers mention dre-mir-19c
(30 sentences)

Sequence

22092 reads, 669 reads per million, 11 experiments

uggaaaagcccuguuaucuggggugAGUUUUGCAGGAUUGCAUCCGGcuuuauuacaacaugcUGUGCAAAUCCAUGCAAAACUCGcugcgccagggacaaacca
(((.....(((((.....((.(((((((((((((((((((((..((((.............))))))).))))).))))))))))))).)).))))).....)))

Structure

   aaaag     uuauc  g             -     -   UC    uuuau 
ugg     cccug     ug ggugAGUUUUGCA GGAUU GCA  CGGc     u
|||     |||||     || ||||||||||||| ||||| |||  ||||     a
acc     gggac     gc ucGCUCAAAACGU CCUAA CGU  GUcg     c
   aaaca     ----c  g             A     A   --    uacaa

Annotation confidence High

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Genome context

chr14: 31467026-31467130 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-19c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-19c-3p

Accession	MIMAT0001784
Description	Danio rerio dre-miR-19c-3p mature miRNA
Sequence	64 - UGUGCAAAUCCAUGCAAAACUCG - 86
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-19c-5p

Accession	MIMAT0031940
Description	Danio rerio dre-miR-19c-5p mature miRNA
Sequence	26 - AGUUUUGCAGGAUUGCAUCCGG - 47
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293