Stem-loop xtr-mir-19a

Accession

MI0004804

Description

Xenopus tropicalis xtr-mir-19a precursor miRNA

Literature search

3 open access papers mention xtr-mir-19a
(7 sentences)

Sequence

27147 reads, 3642.0 reads per million, 4 experiments

gcagucuucuGUUAGUUUUGCAUAGUUGCACUacaagaaaaauguaguUGUGCAAAUCUAUGCAAAACUGAuggcagccug
.(((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).)))

Structure

g   u  u                 --      ---    ag 
 cag cu cuGUUAGUUUUGCAUAG  UUGCAC   Uaca  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc ga gguAGUCAAAACGUAUC  AACGUG   augu  a
-   c  c                 UA      Uug    aa 

Annotation confidence Medium

Genome context

2: 123388213-123388293 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xtr-mir-19a

Mature xtr-miR-19a-5p

• Accession: MIMAT0052083
• Description: Xenopus tropicalis xtr-miR-19a-5p mature miRNA
• Sequence: 11 - GUUAGUUUUGCAUAGUUGCACU - 32
• Evidence: not_experimental

Mature xtr-miR-19a-3p

• Accession: MIMAT0003566
• Description: Xenopus tropicalis xtr-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: not_experimental

References