miRBase entry: ppy-mir-19b-1

Stem-loop ppy-mir-19b-1

Accession

MI0002993

Description

Pongo pygmaeus ppy-mir-19b-1 precursor miRNA

Sequence

cacuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagug
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))

Structure

     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 93460617-93460703 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-19b

Accession	MIMAT0002691
Description	Pongo pygmaeus ppy-miR-19b mature miRNA
Sequence	54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24