miRBase entry: oha-mir-19a

Stem-loop oha-mir-19a

Accession

MI0031395

Description

Ophiophagus hannah oha-mir-19a precursor miRNA

Sequence

uuuugcagucuucuguUAGUUUUGCAUAGUUGCACUAcaggaagaauguaguUGUGCAAAUCUAUGCAAAACUGAuuguggccuguuauu
....((((.((.(.(((((((((((((((((((((((((.......))))...))))))..))))))))))))))).).)).))))....

Structure

uuuu    u  u u               --      ---    gg 
    gcag cu c guUAGUUUUGCAUAG  UUGCAC   UAca  a
    |||| || | |||||||||||||||  ||||||   ||||  a
    uguc gg g uAGUCAAAACGUAUC  AACGUG   augu  g
uuau    c  u u               UA      Uug    aa

Annotation confidence Not enough data

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Genome context

AZIM01002132.1: 158114-158203 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oha-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-19a-5p

Accession	MIMAT0036795
Description	Ophiophagus hannah oha-miR-19a-5p mature miRNA
Sequence	17 - UAGUUUUGCAUAGUUGCACUA - 37
Evidence	not_experimental

Mature oha-miR-19a-3p

Accession	MIMAT0036796
Description	Ophiophagus hannah oha-miR-19a-3p mature miRNA
Sequence	53 - UGUGCAAAUCUAUGCAAAACUGA - 75
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656