Stem-loop ptr-mir-19a

Accession

MI0002997

Description

Pan troglodytes ptr-mir-19a precursor miRNA

Literature search

2 open access papers mention ptr-mir-19a
(5 sentences)

Sequence

65 reads, 2.0 reads per million, 19 experiments

gcaguccucuguuaguuuugcauaguugcacuacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAUgguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg ggUAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 77006997-77007078 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-19a

Mature ptr-miR-19a-3p

• Accession: MIMAT0002696
• Description: Pan troglodytes ptr-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGAU - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24