miRBase entry: ptr-mir-19b-2

Stem-loop ptr-mir-19b-2


Accession
MI0003113
Description
Pan troglodytes ptr-mir-19b-2 precursor miRNA


Sequence


gacauugcuacuuacaauuaguuuugcagguuugcauuucagcguauauauguauauguggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
.((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))

Structure
g      cuac                 -  -       uuca       u 
 acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
 ||||||    ||||||||||||||||| || |||||||    |||||||  
 uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
-      ----                 A  U       Ucgg       g 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 134037891-134037987 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-19b

Accession MIMAT0002698
Description Pan troglodytes ptr-miR-19b mature miRNA
Sequence 63 - UGUGCAAAUCCAUGCAAAACUGA - 85
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24