Stem-loop eca-mir-19a

Accession

MI0012833

Description

Equus caballus eca-mir-19a precursor miRNA

Literature search

15 open access papers mention eca-mir-19a
(17 sentences)

Sequence

42964 reads, 160.0 reads per million, 182 experiments

gcagucuucuguuAGUUUUGCAUAGUUGCACUacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure

    u  u                 --      ---    ag 
gcag cu cuguuAGUUUUGCAUAG  UUGCAC   Uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence High

Genome context

17: 61685318-61685399 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-19a

Mature eca-miR-19a-5p

• Accession: MIMAT0051416
• Description: Equus caballus eca-miR-19a-5p mature miRNA
• Sequence: 14 - AGUUUUGCAUAGUUGCACU - 32
• Evidence: experimental ; Illumina [1]

Mature eca-miR-19a-3p

• Accession: MIMAT0013086
• Description: Equus caballus eca-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131