Stem-loop dre-mir-19b-1

Accession

MI0001904

Description

Danio rerio dre-mir-19b-1 precursor miRNA mir-19

Gene
family

RF00245; mir-19

Literature search

31 open access papers mention dre-mir-19b-1
(132 sentences)

Sequence

1974501 reads, 8128.0 reads per million, 275 experiments

gcuggacccccggucAGUUUUGCUGGUUUGCAUUCAgcuuuuaagacugugcgcUGUGCAAAUCCAUGCAAAACUGAuuguggcagc
((((...((.(((((((((((((((((((((((...((............))...))))))).))).))))))))))))).))))))

Structure

    gac  c             -   -       UCA  uuuua 
gcug   cc cggucAGUUUUGC UGG UUUGCAU   gc     a
||||   || ||||||||||||| ||| |||||||   ||      
cgac   gg guuAGUCAAAACG ACC AAACGUG   cg     g
    ---  u             U   U       Ucg  uguca 

Annotation confidence High

Genome context

chr1: 3297484-3297570 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-19b-1

Mature dre-miR-19b-1-5p

• Accession: MIMAT0003399
• Description: Danio rerio dre-miR-19b-1-5p mature miRNA
• Sequence: 16 - AGUUUUGCUGGUUUGCAUUCA - 36
• Evidence: experimental ; cloned [1]

Mature dre-miR-19b-3p

• Accession: MIMAT0001783
• Description: Danio rerio dre-miR-19b-3p mature miRNA
• Sequence: 55 - UGUGCAAAUCCAUGCAAAACUGA - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293