Stem-loop ssc-mir-19b-2

Accession

MI0013159

Description

Sus scrofa ssc-mir-19b-2 precursor miRNA

Literature search

17 open access papers mention ssc-mir-19b-2
(31 sentences)

Sequence

1096776 reads, 1489.0 reads per million, 214 experiments

uacaGUUAGUUUUGCAGGUUUGCAUuucagcguauguauguguauauggcUGUGCAAAUCCAUGCAAAACUGAuugugau
((((((((((((((((((((((((...((((.((((((....)))))))))))))))).)).))))))))))))))))..

Structure

--                -  -      Uuu    g      u 
  uacaGUUAGUUUUGCA GG UUUGCA   cagc uaugua g
  |||||||||||||||| || ||||||   |||| ||||||  
  guguuAGUCAAAACGU CC AAACGU   GUcg guauau u
ua                A  U      ---    -      g 

Annotation confidence Medium

Genome context

chrX: 126199650-126199729 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ssc-mir-19b-2

Mature ssc-miR-19b-2-5p

• Accession: MIMAT0052641
• Description: Sus scrofa ssc-miR-19b-2-5p mature miRNA
• Sequence: 5 - GUUAGUUUUGCAGGUUUGCAU - 25
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

Mature ssc-miR-19b-3p

• Accession: MIMAT0013950
• Description: Sus scrofa ssc-miR-19b-3p mature miRNA
• Sequence: 51 - UGUGCAAAUCCAUGCAAAACUGA - 73
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100