Stem-loop chi-mir-19a

Accession

MI0030677

Description

Capra hircus chi-mir-19a precursor miRNA

Literature search

45 open access papers mention chi-mir-19a
(204 sentences)

Sequence

47852 reads, 153.0 reads per million, 36 experiments

gcaguccucuguUAGUUUUGCAUAGUUGCACUacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure

    u  u                 --      ---    ag 
gcag cc cuguUAGUUUUGCAUAG  UUGCAC   Uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence High

Genome context

chr12: 66729756-66729837 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from chi-mir-19a

Mature chi-miR-19a-5p

• Accession: MIMAT0058949
• Description: Capra hircus chi-miR-19a-5p mature miRNA
• Sequence: 13 - UAGUUUUGCAUAGUUGCACU - 32
• Evidence: experimental ; Illumina [1]

Mature chi-miR-19a-3p

• Accession: MIMAT0036042
• Description: Capra hircus chi-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40