miRBase entry: cfa-mir-19b-1

Stem-loop cfa-mir-19b-1

Accession

MI0008054

Description

Canis familiaris cfa-mir-19b-1 precursor miRNA

Sequence

guuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUG
((((((((((((((((..((((.............)))))))))).)).))))))))..

Structure

--        -  -      uc    ugugu 
  guuuugca gg uuugca  cagc     g
  |||||||| || ||||||  ||||     a
  CAAAACGU CC AAACGU  GUcg     u
GU        A  U      --    ucuua

Annotation confidence Not enough data

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Genome context

chr22: 42478598-42478656 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-19b

Accession	MIMAT0006652
Description	Canis familiaris cfa-miR-19b mature miRNA
Sequence	38 - UGUGCAAAUCCAUGCAAAACUG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415