Stem-loop ssa-mir-19c-1

Accession

MI0026572

Description

Salmo salar ssa-mir-19c-1 precursor miRNA

Sequence

AGUUUUGCUGCUUUGCAUCCCGCuuaaacaaauguuugcUGUGCAAAUCCAUGCAAAACUG
((((((((((.(((((((...((..((((....)))))).)))))))..)).)))))))).

Structure

-        -  -C       CCC  uu    a 
 AGUUUUGC UG  UUUGCAU   GC  aaac a
 |||||||| ||  |||||||   ||  ||||  
 UCAAAACG AC  AAACGUG   cg  uuug a
G        U  CU       --U  --    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-19c-5p

• Accession: MIMAT0032465
• Description: Salmo salar ssa-miR-19c-5p mature miRNA
• Sequence: 1 - AGUUUUGCUGCUUUGCAUCCCGC - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-19c-3p

• Accession: MIMAT0032466
• Description: Salmo salar ssa-miR-19c-3p mature miRNA
• Sequence: 40 - UGUGCAAAUCCAUGCAAAACUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482