Stem-loop ola-mir-19b-1

Accession

MI0019538

Description

Oryzias latipes ola-mir-19b-1 precursor miRNA

Literature search

1 open access papers mention ola-mir-19b-1
(1 sentences)

Sequence

332411 reads, 3453.0 reads per million, 49 experiments

uugugcaugugggucucugguUAGUUUUGCUGGUUUGCUUUCAgcuuuucaaucuacugcUGUGCAAAUCCAUGCAAAACUGaucauagaacugaaaugagg
.....(((.(.(((((.(((((((((((((((((((((...((((.............)))).))))).))).))))))))))))).)).))).).)))...

Structure

uugug   g g   -  c             -   -     UUU    uuuuc 
     cau u ggu cu ugguUAGUUUUGC UGG UUUGC   CAgc     a
     ||| | ||| || ||||||||||||| ||| |||||   ||||     a
     gua a uca ga acuaGUCAAAACG ACC AAACG   GUcg     u
--gga   a g   a  u             U   U     --U    ucauc 

Annotation confidence High

Genome context

21: 25693239-25693340 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-19b-1

Mature ola-miR-19b-1-5p

• Accession: MIMAT0057117
• Description: Oryzias latipes ola-miR-19b-1-5p mature miRNA
• Sequence: 22 - UAGUUUUGCUGGUUUGCUUUCA - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-19b-3p

• Accession: MIMAT0022594
• Description: Oryzias latipes ola-miR-19b-3p mature miRNA
• Sequence: 61 - UGUGCAAAUCCAUGCAAAACUG - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8