Stem-loop xla-mir-19b-1

Accession

MI0001452

Description

Xenopus laevis xla-mir-19b-1 precursor miRNA

Literature search

3 open access papers mention xla-mir-19b-1
(9 sentences)

Sequence

40532 reads, 1367.0 reads per million, 18 experiments

gcuccugucAGUUUAGCUGGUUUGCAUCAGCUGGcuacugugcUGUGCAAAUCCAUGCAAAACUGAcuguggc
(((.(.((((((((.(((((((((((.((((..((....)))))))))))).))).)).)))))))).).)))

Structure

   c u        A  -   -      U    UG  u 
gcu c gucAGUUU GC UGG UUUGCA CAGC  Gc a
||| | |||||||| || ||| |||||| ||||  ||  
cgg g cAGUCAAA CG ACC AAACGU GUcg  ug c
   u u        A  U   U      -    --  u 

Annotation confidence High

Genome context

chr8L: 48821956-48822028 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xla-mir-19b-1

Mature xla-miR-19b-5p

• Accession: MIMAT0046514
• Description: Xenopus laevis xla-miR-19b-5p mature miRNA
• Sequence: 10 - AGUUUAGCUGGUUUGCAUCAGCUGG - 34
• Evidence: experimental ; Illumina [1]

Mature xla-miR-19b-3p

• Accession: MIMAT0001347
• Description: Xenopus laevis xla-miR-19b-3p mature miRNA
• Sequence: 44 - UGUGCAAAUCCAUGCAAAACUGA - 66
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15642338
   Stage-specific expression of microRNAs during Xenopus development
   "Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H"
   "FEBS Lett (2005) 579:318-324