miRBase entry: cfa-mir-19a

Stem-loop cfa-mir-19a

Accession

MI0008051

Description

Canis familiaris cfa-mir-19a precursor miRNA

Sequence

aguuuugcauaguugcacuacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGA
((((((((((((((((((((((.......))))...))))))..))))))))))))..

Structure

--            --      ---    ag 
  aguuuugcauag  uugcac   uaca  a
  ||||||||||||  ||||||   ||||  a
  UCAAAACGUAUC  AACGUG   augu  g
AG            UA      Uug    aa

Annotation confidence Not enough data

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Genome context

chr22: 42478298-42478355 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-19a

Accession	MIMAT0006650
Description	Canis familiaris cfa-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUGA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415