Stem-loop cfa-mir-19a

Accession

MI0008051

Description

Canis lupus familiaris cfa-mir-19a precursor miRNA

Literature search

10 open access papers mention cfa-mir-19a
(12 sentences)

Sequence

104117 reads, 1118.0 reads per million, 82 experiments

AGUUUUGCAUAGUUGCACUAcaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGA
((((((((((((((((((((((.......))))...))))))..))))))))))))..

Structure

--            --      ---    ag 
  AGUUUUGCAUAG  UUGCAC   UAca  a
  ||||||||||||  ||||||   ||||  a
  UCAAAACGUAUC  AACGUG   augu  g
AG            UA      Uug    aa 

Annotation confidence High

Genome context

22: 42879547-42879604 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-19a

Mature cfa-miR-19a-5p

• Accession: MIMAT0051765
• Description: Canis lupus familiaris cfa-miR-19a-5p mature miRNA
• Sequence: 1 - AGUUUUGCAUAGUUGCACUA - 20
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-19a-3p

• Accession: MIMAT0006650
• Description: Canis lupus familiaris cfa-miR-19a-3p mature miRNA
• Sequence: 36 - UGUGCAAAUCUAUGCAAAACUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415