Stem-loop mdo-mir-19a

Accession

MI0005356

Description

Monodelphis domestica mdo-mir-19a precursor miRNA

Sequence

1025 reads, 22.0 reads per million, 5 experiments

gcaguccucuguuAGUUUUGCAUAGUUGCACUACaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccug
.(((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).)))

Structure

g   u  u                 --      ---    ag 
 cag cc cuguuAGUUUUGCAUAG  UUGCAC   UACa  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
-   c  u                 UA      Uug    aa 

Annotation confidence High

Genome context

ref|NC_077233.2|: 105836238-105836318 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-19a

Mature mdo-miR-19a-5p

• Accession: MIMAT0026706
• Description: Monodelphis domestica mdo-miR-19a-5p mature miRNA
• Sequence: 14 - AGUUUUGCAUAGUUGCACUAC - 34
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-19a-3p

• Accession: MIMAT0004168
• Description: Monodelphis domestica mdo-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45