miRBase entry: ppy-mir-19b-2

Stem-loop ppy-mir-19b-2

Accession

MI0003110

Description

Pongo pygmaeus ppy-mir-19b-2 precursor miRNA

Sequence

acauugcuacuuacaauuaguuuugcagguuugcauuucagcguauauauguauauguggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))

Structure

      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 133612596-133612691 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-19b

Accession	MIMAT0002691
Description	Pongo pygmaeus ppy-miR-19b mature miRNA
Sequence	62 - UGUGCAAAUCCAUGCAAAACUGA - 84
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24