miRBase entry: ggo-mir-19b-2

Stem-loop ggo-mir-19b-2


Accession
MI0003097
Description
Gorilla gorilla ggo-mir-19b-2 precursor miRNA


Sequence


acauugcuacuuacaauuaguuuugcagguuugcauuucagcguauauauguauauguggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))

Structure
      cuac                 -  -       uuca       u 
acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
||||||    ||||||||||||||||| || |||||||    |||||||  
uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
      ----                 A  U       Ucgg       g 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 134207621-134207716 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ggo-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-19b

Accession MIMAT0002663
Description Gorilla gorilla ggo-miR-19b mature miRNA
Sequence 62 - UGUGCAAAUCCAUGCAAAACUGA - 84
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24