Stem-loop tni-mir-19b-1

Accession

MI0003238

Description

Tetraodon nigroviridis tni-mir-19b-1 precursor miRNA

Sequence

1551 reads, 57.0 reads per million, 3 experiments

caaucaucguuuggucAGUUUUGCUGGUUUGCAUUCAgcuuuguugcugugcUGUGCAAAUCCAUGCAAAACUGAcu
............((((((((((((((((((((((.((((......))))....))))))).))).))))))))))))

Structure

caaucaucguuu            -   -       ---U    uu 
            ggucAGUUUUGC UGG UUUGCAU    CAgc  u
            |||||||||||| ||| |||||||    ||||   
            ucAGUCAAAACG ACC AAACGUG    gucg  g
------------            U   U       Ucgu    uu 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

5: 8188259-8188335 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tni-mir-19b-1

Mature tni-miR-19b-1-5p

• Accession: MIMAT0052936
• Description: Tetraodon nigroviridis tni-miR-19b-1-5p mature miRNA
• Sequence: 17 - AGUUUUGCUGGUUUGCAUUCA - 37
• Evidence: not_experimental

Mature tni-miR-19b-3p

• Accession: MIMAT0002923
• Description: Tetraodon nigroviridis tni-miR-19b-3p mature miRNA
• Sequence: 53 - UGUGCAAAUCCAUGCAAAACUGA - 75
• Evidence: not_experimental

References