Stem-loop fru-mir-19a

Accession

MI0003235

Description

Fugu rubripes fru-mir-19a precursor miRNA

Literature search

1 open access papers mention fru-mir-19a
(1 sentences)

Sequence

10050 reads, 118.0 reads per million, 12 experiments

gcaguucucuGCUAGUUUUGCAUAGUUGCACUacaagaauagaggaguUGUGCAAAUCUAUGCAAAACUGAugguggccug
((((....))))(((((((((((((((((((.((............)).))))))..)))))))))))))...........

Structure

gcaguucucuGC             --      U  aagaa 
            UAGUUUUGCAUAG  UUGCAC ac     u
            |||||||||||||  |||||| ||      
            GUCAAAACGUAUC  AACGUG ug     a
-guccggugguA             UA      U  aggag 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042297.1|: 16855617-16855697 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fru-mir-19a

Mature fru-miR-19a-5p

• Accession: MIMAT0052828
• Description: Fugu rubripes fru-miR-19a-5p mature miRNA
• Sequence: 11 - GCUAGUUUUGCAUAGUUGCACU - 32
• Evidence: not_experimental

Mature fru-miR-19a-3p

• Accession: MIMAT0002920
• Description: Fugu rubripes fru-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: not_experimental

References