Stem-loop dre-mir-19a-1

Accession

MI0001903

Description

Danio rerio dre-mir-19a-1 precursor miRNA mir-19

Gene
family

RF00245; mir-19

Literature search

46 open access papers mention dre-mir-19a-1
(220 sentences)

Sequence

538820 reads, 3213.0 reads per million, 270 experiments

uggugcaguucucugcuAGUUUUGCAUAGUUGCACUACaagaaaacgggaguUGUGCAAAUCUAUGCAAAACUGAugguggccugcugc
....(((((...(((((((((((((((((((((((.((............)).))))))..))))))))))))...)))))...)))))

Structure

uggu     ucu     ---            --      U  aagaa 
    gcagu   cugcu   AGUUUUGCAUAG  UUGCAC AC     a
    |||||   |||||   ||||||||||||  |||||| ||      
    cgucg   ggugg   UCAAAACGUAUC  AACGUG ug     a
----     ucc     uAG            UA      U  agggc 

Annotation confidence High

Genome context

chr1: 3297848-3297936 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-19a-1

Mature dre-miR-19a-1-5p

• Accession: MIMAT0003398
• Description: Danio rerio dre-miR-19a-1-5p mature miRNA
• Sequence: 18 - AGUUUUGCAUAGUUGCACUAC - 38
• Evidence: experimental ; cloned [1]

Mature dre-miR-19a-1-3p

• Accession: MIMAT0001782
• Description: Danio rerio dre-miR-19a-1-3p mature miRNA
• Sequence: 53 - UGUGCAAAUCUAUGCAAAACUGA - 75
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293