miRBase entry: oha-mir-19b

Stem-loop oha-mir-19b

Accession

MI0031396

Description

Ophiophagus hannah oha-mir-19b precursor miRNA

Sequence

uaaacacuguucucugguuAGUUUUGCAGGUUUGCAUCCAGCuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGAcuguggcagugaaaag
....(((((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).))))))).....

Structure

-uaaa       cuc              -  -      UC    uguau 
     cacuguu   ugguuAGUUUUGCA GG UUUGCA  CAGC     g
     |||||||   |||||||||||||| || ||||||  ||||     a
     gugacgg   gucAGUCAAAACGU CC AAACGU  GUcg     u
gaaaa       --u              A  U      --    ucuca

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AZIM01002132.1: 157823-157918 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oha-mir-19b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-19b-5p

Accession	MIMAT0036797
Description	Ophiophagus hannah oha-miR-19b-5p mature miRNA
Sequence	20 - AGUUUUGCAGGUUUGCAUCCAGC - 42
Evidence	not_experimental

Mature oha-miR-19b-3p

Accession	MIMAT0036798
Description	Ophiophagus hannah oha-miR-19b-3p mature miRNA
Sequence	58 - UGUGCAAAUCCAUGCAAAACUGA - 80
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656