Stem-loop ola-mir-19d

Accession

MI0019474

Description

Oryzias latipes ola-mir-19d precursor miRNA

Sequence

65886 reads, 697.0 reads per million, 48 experiments

uucugguccuggccAGCUUUGCAGGGUGGGCAGUCAGCcugugcaugccuggagcagcUGUGCAAACCCAUGCAAAACUGacuauggccagca
..((((((.(((.(((.((((((((((..(((..((((.(((.((....))..))))))))))..)))).)))))).))).))).))))))..

Structure

uu      c   c   C      -    GG   GU    c   -g  u 
  cugguc ugg cAG UUUGCA GGGU  GCA  CAGC ugu  ca g
  |||||| ||| ||| |||||| ||||  |||  |||| |||  ||  
  gaccgg auc GUC AAACGU CCCA  CGU  GUcg acg  gu c
ac      u   a   A      A    AA   --    -   ag  c 

Annotation confidence High

Genome context

10: 2001485-2001577 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-19d

Mature ola-miR-19d-5p

• Accession: MIMAT0057113
• Description: Oryzias latipes ola-miR-19d-5p mature miRNA
• Sequence: 15 - AGCUUUGCAGGGUGGGCAGUCAGC - 38
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-19d-3p

• Accession: MIMAT0022592
• Description: Oryzias latipes ola-miR-19d-3p mature miRNA
• Sequence: 59 - UGUGCAAACCCAUGCAAAACUG - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8