miRBase entry: ola-mir-19a

Stem-loop ola-mir-19a

Accession

MI0019540

Description

Oryzias latipes ola-mir-19a precursor miRNA

Literature search

1 open access papers mention ola-mir-19a
(1 sentences)

Sequence

augcacagacugucaguucucuguuaguuuugcauaguugcacugcaagaagagaugcguUGUGCAAAUCUAUGCAAAgcugauaguggccuguguuuucaucugaau
..((((((...((((.....(((((((((((((((((((((((((((........))))..))))))..)))))))))))))))))))))))))))............

Structure

----------au      acu    guucu                 --      --    aga 
            gcacag   guca     cuguuaguuuugcauag  uugcac  ugca   a
            ||||||   ||||     |||||||||||||||||  ||||||  ||||    
            uguguc   cggu     gauagucgAAACGUAUC  AACGUG  gcgu   g
uaagucuacuuu      ---    -----                 UA      Uu    aga

Annotation confidence Not enough data

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Genome context

21: 25693520-25693627 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-19a

Accession	MIMAT0022653
Description	Oryzias latipes ola-miR-19a mature miRNA
Sequence	61 - UGUGCAAAUCUAUGCAAA - 78
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8