Stem-loop ola-mir-19a

Accession

MI0019540

Description

Oryzias latipes ola-mir-19a precursor miRNA

Literature search

2 open access papers mention ola-mir-19a
(2 sentences)

Sequence

32863 reads, 421.0 reads per million, 42 experiments

augcacagacugucaguucucuguUAGUUUUGCAUAGUUGCACUGCaagaagagaugcguUGUGCAAAUCUAUGCAAAGCUGauaguggccuguguuuucaucugaau
..((((((...((((.....(((((((((((((((((((((((((((........))))..))))))..)))))))))))))))))))))))))))............

Structure

----------au      acu    guucu                 --      --    aga 
            gcacag   guca     cuguUAGUUUUGCAUAG  UUGCAC  UGCa   a
            ||||||   ||||     |||||||||||||||||  ||||||  ||||    
            uguguc   cggu     gauaGUCGAAACGUAUC  AACGUG  gcgu   g
uaagucuacuuu      ---    -----                 UA      Uu    aga 

Annotation confidence High

Genome context

21: 25693520-25693627 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-19a

Mature ola-miR-19a-5p

• Accession: MIMAT0057157
• Description: Oryzias latipes ola-miR-19a-5p mature miRNA
• Sequence: 25 - UAGUUUUGCAUAGUUGCACUGC - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-19a-3p

• Accession: MIMAT0022653
• Description: Oryzias latipes ola-miR-19a-3p mature miRNA
• Sequence: 61 - UGUGCAAAUCUAUGCAAAGCUG - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8