Stem-loop gga-mir-33-1

Accession

MI0001170

Description

Gallus gallus gga-mir-33-1 precursor miRNA

Literature search

8 open access papers mention gga-mir-33-1
(121 sentences)

Sequence

24272 reads, 290 reads per million, 5 experiments

cuguaGUGCAUUGUAGUUGCAUUGCaugugcuggcaguaacugugcAAUGUUCCUGCAGUGCAGUAcag
(((((.((((((((((..(((((((((.((((...))))...)))))))))..)))))))))).)))))

Structure

     G          UU         --g    g 
cugua UGCAUUGUAG  GCAUUGCau   ugcu  
||||| ||||||||||  |||||||||   |||| g
gacAU ACGUGACGUC  UGUAAcgug   auga  
     G          CU         uca    c 

Annotation confidence High

Genome context

chr1: 49529873-49529941 [-]

Mature gga-miR-33-5p

• Accession: MIMAT0001100
• Description: Gallus gallus gga-miR-33-5p mature miRNA
• Sequence: 6 - GUGCAUUGUAGUUGCAUUGC - 25
• Evidence: experimental ; cloned [1-2], Illumina [3]

Mature gga-miR-33-3p

• Accession: MIMAT0026490
• Description: Gallus gallus gga-miR-33-3p mature miRNA
• Sequence: 47 - AAUGUUCCUGCAGUGCAGUA - 66
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45